A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2024-06-17, 12:35 BST
based on data in:
/Users/rmcolq/Work/git/pathbio3/analysis/Schistosoma_mansoni/star
General Statistics
| Sample Name | % Aligned | M Aligned |
|---|---|---|
| ERR022872 | 62.5% | 20.2M |
| ERR022873 | 72.4% | 14.6M |
| ERR022874 | 56.3% | 7.6M |
| ERR022875 | 76.4% | 19.1M |
| ERR022876 | 58.8% | 27.7M |
| ERR022877 | 72.3% | 43.9M |
| ERR022878 | 73.0% | 31.7M |
| ERR022879 | 75.6% | 43.0M |
| ERR022880 | 77.2% | 38.1M |
| ERR022881 | 72.6% | 35.3M |
| ERR022882 | 74.0% | 32.1M |
| ERR022883 | 76.1% | 35.7M |
STAR
STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.
Alignment Scores
Gene Counts
Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.