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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.22.2

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/MultiQC/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-06-17, 12:35 BST based on data in: /Users/rmcolq/Work/git/pathbio3/analysis/Schistosoma_mansoni/star

        General Statistics

        Showing 12/12 rows and 2/2 columns.
        Sample Name% AlignedM Aligned
        ERR022872
        62.5%
        20.2M
        ERR022873
        72.4%
        14.6M
        ERR022874
        56.3%
        7.6M
        ERR022875
        76.4%
        19.1M
        ERR022876
        58.8%
        27.7M
        ERR022877
        72.3%
        43.9M
        ERR022878
        73.0%
        31.7M
        ERR022879
        75.6%
        43.0M
        ERR022880
        77.2%
        38.1M
        ERR022881
        72.6%
        35.3M
        ERR022882
        74.0%
        32.1M
        ERR022883
        76.1%
        35.7M

        STAR

        STAR is an ultrafast universal RNA-seq aligner.DOI: 10.1093/bioinformatics/bts635.

        Alignment Scores

        Created with MultiQC

        Gene Counts

        Statistics from results generated using --quantMode GeneCounts. The three tabs show counts for unstranded RNA-seq, counts for the 1st read strand aligned with RNA and counts for the 2nd read strand aligned with RNA.

        Created with MultiQC

        MultiQC v1.22.2 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.